Kei-ichi Okazaki: search on Z-Library

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1

A sensitive spectrofluorimetric determination of human serum albumin with chrome azurol S

Yutaka Saito, Yukiko Inden-Okazaki, Shoko Wada-Yano, Atsuko Kanetsuna, Kei-Ichi Miyazaki, Masaki Mifune, Yoshimasa Tanaka, Hideki Okuda

Journal:

Analytica Chimica Acta

Year:

1985

Language:

english

File:

PDF, 158 KB

english, 1985

2

Structural Comparison of F1-ATPase: Interplay among Enzyme Structures, Catalysis, and Rotations

Kei-ichi Okazaki, Shoji Takada

Journal:

Year:

2011

Language:

english

File:

PDF, 1.64 MB

english, 2011

3

Molecular Simulation Study of Kinesin: Coupling between ATPase Domain Conformational Change and Mechanical Stepping

Kanada, Ryo, Okazaki, Kei-ichi, Takada, Shoji

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 83 KB

english, 2009

4

Water Mediated Membrane Transport: From Channels to Proton Pumps

Hummer, Gerhard, Kaila, Ville R.I., Zhu, Fangqiang, Okazaki, Kei-ichi, Wikström, Mårten

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

5

CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work

Kenzaki, Hiroo, Koga, Nobuyasu, Hori, Naoto, Kanada, Ryo, Li, Wenfei, Okazaki, Kei-ichi, Yao, Xin-Qiu, Takada, Shoji

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 1.98 MB

english, 2011

6

Biomolecular Coarse-Grained Simulation Program CafeMol

Kenzaki, Hiroo, Koga, Nobuyasu, Fujiwara, Shinji, Hori, Naoto, Kanada, Ryo, Okazaki, Kei-ichi, Yao, Xin-Qiu, Li, Wenfei, Takada, Shoji

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 34 KB

english, 2010

7

Application of an Inter-Protein Coarse-Grained Force Field to Binding Process of Actomyosin

Okazaki, Kei-ichi, Takano, Mitsunori

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 82 KB

english, 2010

8

Exploring an Intermediate State of F1-ATPase by Atomistic Molecular Dynamics Simulation

Okazaki, Kei-ichi, Hummer, Gerhard

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

9

Computational studies of ion binding in cation/proton antiporters

Warnau, Judith, Okazaki, Kei-ichi, Hummer, Gerhard

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2014

Language:

english

File:

PDF, 48 KB

english, 2014

10

Temperature-Enhanced Association of Proteins Due to Electrostatic Interaction: A Coarse-Grained Simulation of Actin–Myosin Binding

Okazaki, Kei-ichi, Sato, Takato, Takano, Mitsunori

Journal:

Journal of the American Chemical Society

Year:

2012

Language:

english

File:

PDF, 2.04 MB

english, 2012

11

Chemical conversion of lycotonine into an aconitine alkaloid, 7-deoxylycoctonine

Takayama, Hiromitsu, Yamaguchi, Kei-ichi, Okazaki, Toshio, Aimi, Norio, Sakai, Shin-ichiro

Journal:

Journal of the Chemical Society Chemical Communications

Year:

1987

Language:

english

File:

PDF, 201 KB

english, 1987

12

Elasticity, friction, and pathway of γ-subunit rotation in F o F 1 -ATP synthase

Okazaki, Kei-ichi, Hummer, Gerhard

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 1.66 MB

english, 2015

13

F 1 -ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements

Sugawa, Mitsuhiro, Okazaki, Kei-ichi, Kobayashi, Masaru, Matsui, Takashi, Hummer, Gerhard, Masaike, Tomoko, Nishizaka, Takayuki

Journal:

Proceedings of the National Academy of Sciences

Year:

2016

Language:

english

File:

PDF, 1.79 MB

english, 2016

14

Multiscale analysis of functional motions in F1-ATPase: From Pi release to elasticity and friction of γ-subunit rotation

Okazaki, Kei-ichi, Hummer, Gerhard

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

2014

Language:

english

File:

PDF, 52 KB

english, 2014

15

Multiscale Analysis of Functional Motions in F1-ATPase: From Pi Release to Elasticity and Friction of γ-Subunit Rotation

Okazaki, Kei-ichi, Hummer, Gerhard

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 42 KB

english, 2015

16

A sensitive spectrofluorimetric method for the determination of human serum albumin with chrome-azurol S.

SAITO, YUTAKA, OKAZAKI(INDEN), YUKIKO, YANO(WADA), SHOKO, KANETSUNA, ATSUKO, OKUDA, HIDEKI, MIYAZAKI, KEI-ICHI, MIFUNE, MASAKI, ODO, JUNICHI, TANAKA, YOSHIMASA

Journal:

CHEMICAL & PHARMACEUTICAL BULLETIN

Year:

1986

File:

PDF, 529 KB

1986

17

Conformational Transition from Catalytic Dwell to ATP-Binding Dwell in F 1 -ATPase

Okazaki, Kei-ichi, Sugawa, Mitsuhiro, Hummer, Gerhard

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

18

1P589 Coupling between protein conformational change and ligand binding reaction studied by multiple-basin energy landscape model(27. Molecular dynamics simulation,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Okazaki, Kei-ichi, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 157 KB

english, 2006

19

2P145 Mechanical principle of the motor protein KIF1A studied by molecular dynamics simulation(Molecular motors,Poster Presentations)

Kuwata, Takeshi, Okazaki, Kei-ichi, Tatsumi, Rie, Koga, Nobuyasu, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2007

File:

PDF, 229 KB

2007

20

3P074 Coupled protein conformational change and ligand-binding affinity revealed by coarse-grained simulations : application to molecular motors(Proteins-stability, folding, and other physicochemical properties,Oral Presentations)

Okazaki, Kei-ichi, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2007

Language:

english

File:

PDF, 168 KB

english, 2007

21

2P-199 Mechanical principle of the motor protein KIF1A studied by molecular dynamics simulation (2)(The 46th Annual Meeting of the Biophysical Society of Japan)

Kuwata, Takeshi, Okazaki, Kei-ichi, Kanada, Ryo, Kenzaki, Hiroo, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 285 KB

english, 2008

22

2P-120 Application of an inter-protein coarse-grained force field to binding process of actomyosin(Molecular motor,The 47th Annual Meeting of the Biophysical Society of Japan)

Okazaki, Kei-ichi, Takano, Mitsunori

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 241 KB

english, 2009

23

1TA4-02 Mechanism of unidirectional move of KIF1A motor studied by coarse-grained simulations(The 47th Annual Meeting of the Biophysical Society of Japan)

Kanada, Ryo, Okazaki, Kei-ichi, Kenzaki, Hiroo, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 234 KB

english, 2009

24

3P042 Atomic-level observation of how ATP-binding influences the structural and solvation state of myosin(Protein: Structure & Function,The 48th Annual Meeting of the Biophysical Society of Japan)

Sato, Takato, Ohnuki, Jun, Okazaki, Kei-ichi, Takano, Mitsunori

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 239 KB

english, 2010

25

3P161 Are the actin-biding cleft closure and the lever-arm swing of myosin thermodynamically-favored structural changes?(Molecular motor,The 48th Annual Meeting of the Biophysical Society of Japan)

Ohnuki, Jun, Sato, Takato, Okazaki, Kei-ichi, Takano, Mitsunori

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 238 KB

english, 2010

26

1P-129 Mechanism of unidirectional move of KIF1A motor studied by coarse-grained simulations(Molecular motor, The 47th Annual Meeting of the Biophysical Society of Japan)

Kanada, Ryo, Kuwata, Takeshi, Okazaki, Kei-ichi, Kenzaki, Hiroo, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2009

Language:

english

File:

PDF, 214 KB

english, 2009

27

1P147 Multiscale analysis of functional motions in F1-ATPase : From Pi release to elasticity and friction of γ-subunit rotation(11. Molecular motor,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Okazaki, Kei-ichi, Hummer, Gerhard

Journal:

Seibutsu Butsuri

Year:

2014

Language:

english

File:

PDF, 694 KB

english, 2014

28

1P-145 Simulation study on stepping mechanism of Conventional Kinesin by coarse-grained model(The 46th Annual Meeting of the Biophysical Society of Japan)

Kanada, Ryo, Okazaki, Kei-ichi, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 284 KB

english, 2008

29

3P163 Structural comparison of F_1-ATPase : Coupling among enzyme structures, reaction sites, and rotations(Molecular motor,The 48th Annual Meeting of the Biophysical Society of Japan)

Okazaki, Kei-ichi, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2010

Language:

english

File:

PDF, 238 KB

english, 2010

30

Multiscale Analysis of Functional Motions in F1-ATPase: From Pi Release to Elasticity and Friction of γ-subunit Rotation

OKAZAKI, Kei-ichi

Journal:

Seibutsu Butsuri

Year:

2015

File:

PDF, 821 KB

2015

31

2P-159 Coarse-grained simulation for understanding working mechanism of F_1-ATPase(The 46th Annual Meeting of the Biophysical Society of Japan)

Okazaki, Kei-ichi, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 287 KB

english, 2008

32

2S4-4 Structure change coupled with binding and its application to biomolecular systems(2S4 What protein tertiary structure tells us,The 46th Annual Meeting of the Biophysical Society of Japan)

Okazaki, Kei-ichi, Takada, Shoji

Journal:

Seibutsu Butsuri

Year:

2008

Language:

english

File:

PDF, 288 KB

english, 2008

33

Processive chitinase is Brownian monorail operated by fast catalysis after peeling rail from crystalline chitin

Nakamura, Akihiko, Okazaki, Kei-ichi, Furuta, Tadaomi, Sakurai, Minoru, Iino, Ryota

Journal:

Nature Communications

Year:

2018

Language:

english

File:

PDF, 2.52 MB

english, 2018

34

Mechanism of the electroneutral sodium/proton antiporter PaNhaP from transition-path shooting

Okazaki, Kei-ichi, Wöhlert, David, Warnau, Judith, Jung, Hendrik, Yildiz, Özkan, Kühlbrandt, Werner, Hummer, Gerhard

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 2.04 MB

english, 2019

35

Processive Chitinase is Burnt-Bridge Brownian Motor Operated by Fast Catalysis after Peeling Rail from Crystalline Chitin

Nakamura, Akihiko, Okazaki, Kei-ichi, Furuta, Tadaomi, Sakurai, Minoru, Iino, Ryota

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 50 KB

english, 2019

36

Processive Chitinase is Burnt-Bridge Brownian Motor Operated by Fast Catalysis after Peeling Rail from Crystalline Chitin

Nakamura, Akihiko, Okazaki, Kei-ichi, Furuta, Tadaomi, Sakurai, Minoru, Iino, Ryota

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 50 KB

2019

37

Curvature induction and sensing of the F-BAR protein Pacsin1 on lipid membranes via molecular dynamics simulations

Mahmood, Md. Iqbal, Noguchi, Hiroshi, Okazaki, Kei-ichi

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 7.67 MB

english, 2019

38

Ion Binding and Selectivity of the Na + /H + Antiporter MjNhaP1 from Experiment and Simulation

Warnau, Judith, Wöhlert, David, Okazaki, Kei-ichi, Yildiz, Oezkan, Gámiz-Hernández, Ana Patricia, Kaila, Ville R. I., Kühlbrandt, Werner, Hummer, Gerhard

Journal:

Journal of Physical Chemistry B

Year:

2019

File:

PDF, 2.90 MB

2019

39

Chemical-State-Dependent Free Energy Profile from Single-Molecule Trajectories of Biomolecular Motor: Application to Processive Chitinase

Okazaki, Kei-ichi, Nakamura, Akihiko, Iino, Ryota

Journal:

Journal of Physical Chemistry B

Year:

2020

File:

PDF, 4.21 MB

2020

40

Learning reaction coordinates via cross-entropy minimization: Application to alanine dipeptide

Mori, Yusuke, Okazaki, Kei-ichi, Mori, Toshifumi, Kim, Kang, Matubayasi, Nobuyuki

Journal:

The Journal of Chemical Physics

Year:

2020

File:

PDF, 1.91 MB

2020